Package: visualFields 1.0.5

visualFields: Statistical Methods for Visual Fields

A collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualization, statistical analysis, and clinical interpretation of visual-field loss and its change over time. It is intended to be a tool for collaborative research. The package is described in Marin-Franch and Swanson (2013) <doi:10.1167/13.4.10> and is part of the Open Perimetry Initiative (OPI) [Turpin, Artes, and McKendrick (2012) <doi:10.1167/12.11.22>].

Authors:Ivan Marin-Franch [cre, aut, rev, cph], William H Swanson [fnd, dtc], Michael Wall [fnd, dtc], Andrew Turpin [ctb], Paul H Artes [ctb, dtc], Cord Huchzermeyer [ctb], Giovanni Montesano [ctb], Mitchell W Dul [dtc]

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visualFields.pdf |visualFields.html✨
visualFields/json (API)

# Install 'visualFields' in R:
install.packages('visualFields', repos = c('https://imarinfr.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • drasdolut - Precomputed X and Y displacement of ganglion cell bodies for any given X and Y location on the retina
  • gpars - List of graphical parameters
  • locmaps - Location maps
  • normvals - List of normative values that can be used for statistical analysis and visualization
  • vfctrIowaPC26 - Central visual field
  • vfctrIowaPeri - Peripheral visual field
  • vfctrSunyiu10d2 - SUNY-IU dataset of healthy eyes for 10-2 static automated perimetry
  • vfctrSunyiu24d2 - SUNY-IU dataset of healthy eyes for 24-2 static automated perimetry
  • vfpwgRetest24d2 - Short-term retest static automated perimetry data
  • vfpwgSunyiu24d2 - Series of 24-2 static automated perimetry data for a patient with glaucoma

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.67 score 47 scripts 599 downloads 66 exports 94 dependencies

Last updated 2 months agofrom:77d9e7e00c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 22 2024
R-4.5-winOKOct 22 2024
R-4.5-linuxOKOct 22 2024
R-4.4-winOKOct 22 2024
R-4.4-macOKOct 22 2024
R-4.3-winOKOct 22 2024
R-4.3-macOKOct 22 2024

Exports:.vfenvagelmbundlePathcart2jpolargdefgetagegetghgetglgetglpgetgpargetlocinigetlocmapgetnvgetpdgetpdpgettdgettdpgetvfcolsghdefglrjpolar2cartloadhfadicomloadhfadicombatchloadhfaxmlloadhfaxmlbatchloadoctopusloc2psilocreadlocwritelutdeflutgdefnvgeneratepddefplrpoplrpsi2octsetdefaultssetgparsetlocinisetlocmapsetnvtddefvf2gcvfaggregatevfcolschemevfdescvffiltervfgparvfisvalidvfjoinvflegoplotvfmeanvfplotvfplotplrvfprogcolschemevfreadvfretestdistvfselectvfsfavfsfashinyvfsortvfspavfsparklinesvfspashinyvftessvfwrite

Dependencies:abindbackportsbase64encbitopsbootbslibcachemcheckmatecliclustercolorspacecombinatcommonmarkcrayoncrosstalkdata.tabledeldirdigestdplyrDTevaluatefansifarverfastmapfontawesomeforeignFormulafsgenericsggplot2gluegridExtragtablegtoolshighrHmischtmlTablehtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmennetoro.dicomoro.niftipillarpkgconfigplotrixpolyclippracmapromisesR6rappdirsRColorBrewerRcpprlangrmarkdownRNiftirpartrstudioapisassscalesshinyshinyjssourcetoolsstringistringrtibbletidyselecttinytexutf8vctrsviridisviridisLitewithrxfunXMLxtableyaml

Readme and manuals

Help Manual

Help pageTopics
visualFields: statistical methods for visual fieldsvisualFields-package visualFields
The Jansonius map for average path of nerve fiber bundlesbundlePath cart2jpolar jpolar2cart loc2psi psi2oct vf2gc
Precomputed X and Y displacement of ganglion cell bodies for any given X and Y location on the retinadrasdolut
Calculates agegetage
Global and pointwise linear regression analysesglr plr poplr
List of graphical parametersgpars
Loaders from perimetersloadhfadicom loadhfadicombatch loadhfaxml loadhfaxmlbatch loadoctopus
Location mapslocmaps
Locmap managementlocread locwrite
List of normative values that can be used for statistical analysis and visualizationnormvals
Normative values generation and managementagelm gdef ghdef lutdef lutgdef nvgenerate pddef tddef
Settings in the visualField environment.vfenv getgpar getlocini getlocmap getnv getvfcols setdefaults setgpar setlocini setlocmap setnv
Statistical analyses for visual fields datavfaggregate vfmean vfretestdist
Central visual fieldvfctrIowaPC26
Peripheral visual fieldvfctrIowaPeri
SUNY-IU dataset of healthy eyes for 10-2 static automated perimetryvfctrSunyiu10d2
SUNY-IU dataset of healthy eyes for 24-2 static automated perimetryvfctrSunyiu24d2
Visual field datasetgetgh getgl getglp getpd getpdp gettd gettdp vfdesc vffilter vfisvalid vfjoin vfread vfselect vfsort vfwrite
Plots for visual fields datavfcolscheme vfgpar vflegoplot vfplot vfplotplr vfprogcolscheme vfsparklines vftess
Short-term retest static automated perimetry datavfpwgRetest24d2
Series of 24-2 static automated perimetry data for a patient with glaucomavfpwgSunyiu24d2
Single Field Reportingvfsfa vfsfashiny
Series Progession Analysisvfspa vfspashiny